Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1561391	1561450	60	46 [0]	[0] 8	ddpC	D‑Ala‑D‑Ala transporter subunit

GCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATC  >  W3110S.gb/1561329‑1561390                                                              | gCGAGGATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:899319/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:709065/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1076903/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:449428/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:453327/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:453626/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:476641/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:497820/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:529913/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:534554/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:572993/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:609475/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:649890/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:437538/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:738264/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:743649/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:781222/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:865799/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:871926/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:935431/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:943978/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:946701/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:969230/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1384091/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1092095/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1112079/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1138282/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1182681/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1193943/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1216224/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1222654/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1270210/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1290045/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1361506/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1379281/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:424696/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1411931/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1418991/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:1430762/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:271183/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:296607/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:356540/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:360518/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:383014/1‑62 (MQ=255) gCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:422026/1‑62 (MQ=255) gCGAGAATTGATTGATGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATc  >  1:53189/1‑62 (MQ=255)                                                              | GCGAGAATTGATTGCTGACTGCCGACCAGTACGCGGCTAAACAGATCGCGTCCCACTTCATC  >  W3110S.gb/1561329‑1561390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑