Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1563451	1563989	539	60 [0]	[0] 13	ddpA	D‑Ala‑D‑Ala transporter subunit

CACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAA  >  W3110S.gb/1563389‑1563450                                                              | cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:723242/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:485734/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:497646/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:500293/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:50750/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:514699/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:518327/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:531955/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:560253/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:591309/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:599951/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:6003/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:640957/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:653794/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:712413/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:423588/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:747968/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:750056/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:764023/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:767206/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:772762/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:810541/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:815312/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:842239/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:861858/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:885764/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:904640/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:912505/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:938369/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:969358/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1366202/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:103196/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1033326/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1038600/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1042103/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1066028/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1119381/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1151652/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1175511/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1233889/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1275986/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1288346/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1313670/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1360238/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1363856/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1014832/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1381519/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1394389/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:1411590/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:157747/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:244614/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:264122/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:287680/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:310444/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:327648/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:336074/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:365252/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGcaa  >  1:413482/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCAGCGGcaa  >  1:352667/1‑62 (MQ=255) cacaTTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATACACCGGCACCGCATCGGcaa  >  1:39592/1‑62 (MQ=255)                                                              | CACATTGACTTTATTTTCCTGCTTCAGGGCGTTGAGTTGATCCACCGGCAGCGCATCGGCAA  >  W3110S.gb/1563389‑1563450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑