Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1593799	1593818	20	26 [0]	[0] 4	hipA	regulator with hipB

ATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAC  >  W3110S.gb/1593738‑1593798                                                             | atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:353473/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:807820/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:792520/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:751742/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:726910/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:659805/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:653852/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:649375/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:578308/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:571379/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:536978/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:930956/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:345843/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:19120/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:190704/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:185842/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:1380595/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:1369907/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:134737/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:12587/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:1099535/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:1216267/61‑1 (MQ=255) atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:1114352/61‑1 (MQ=255)  ttCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:965703/60‑1 (MQ=255)  ttCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:420246/60‑1 (MQ=255)  ttCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAc  <  1:1236236/60‑1 (MQ=255)                                                             | ATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCAC  >  W3110S.gb/1593738‑1593798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑