Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2003369	2003591	223	55 [0]	[0] 31	fliA	RNA polymerase, sigma 28 (sigma F) factor

ATAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTC  >  W3110S.gb/2003327‑2003368                                          | aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:68693/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:299469/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:341651/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:348999/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:430357/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:456437/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:482036/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:484439/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:495183/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:522633/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:555561/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:590102/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:590777/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:603978/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:258152/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:697227/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:708306/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:713201/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:806997/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:828898/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:836395/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:845347/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:848994/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:88070/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:931612/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:980483/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:991842/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1308434/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1024111/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1046789/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1054541/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1086681/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1102452/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1116104/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1178739/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1184210/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1221598/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1228340/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1241389/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1242503/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1272166/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1014031/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1311649/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1320979/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1326708/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1328370/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1340342/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:13429/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1380427/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1415705/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:1417139/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:187289/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:211937/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTc  >  1:225872/1‑42 (MQ=255) aTAGAGGGTTAATACCAGTTTTTCGCGCTCAGGCAACGTTTc  >  1:550581/1‑42 (MQ=255)                                          | ATAGAGGGTTAATACCAGTTTTTCGCGCTCCGGCAACGTTTC  >  W3110S.gb/2003327‑2003368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑