Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2099804	2099897	94	35 [0]	[3] 47	cld	regulator of length of O‑antigen component of lipopolysaccharide chains

AACAACGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTC  >  W3110S.gb/2099750‑2099803                                                      | aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:632473/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:251349/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:398792/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:447702/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:486789/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:507185/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:581404/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:585860/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:602551/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:233503/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:727911/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:796468/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:797911/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:81780/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:821786/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:889941/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:905828/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:923142/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1376968/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1128235/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1129903/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1156685/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1167513/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1181900/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1222030/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1240457/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1246449/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1081718/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1382265/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1411930/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1413920/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:1455383/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:146773/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:179394/1‑54 (MQ=255) aacaacGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTc  >  1:208633/1‑54 (MQ=255)                                                      | AACAACGTATCTTGTGTGATATCTTCGCCAGTCTGTTGAATCTGCGGTTTTGTC  >  W3110S.gb/2099750‑2099803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑