Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2109246	2109314	69	53 [0]	[0] 55	wbbH	O‑antigen polymerase

TAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATC  >  W3110S.gb/2109184‑2109245                                                              | tAGAAAATTCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:395448/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:721075/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:344627/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:375638/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:452608/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:499384/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:502331/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:534972/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:57763/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:630712/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:682390/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:702073/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:702666/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1018362/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:736158/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:736643/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:758538/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:78067/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:819847/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:829561/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:83992/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:912117/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:939206/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:972484/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:989063/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1289481/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1006255/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1091428/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:109412/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1124331/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1133633/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1135032/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1198744/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1268271/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1275160/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1275777/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1283359/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:30926/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1332111/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1340887/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:138285/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1438601/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1445966/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:1447621/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:16103/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:172841/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:195433/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:23001/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:238785/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:249650/62‑1 (MQ=255) tAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTAATATc  <  1:849457/62‑1 (MQ=255)         tCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:878878/54‑1 (MQ=255)                     cATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATc  <  1:315858/42‑1 (MQ=255)                                                              | TAGAAAAATCAACGTAGCGTCATTTAACTGAAAAGCATATATATCTGACGTTATTTCATATC  >  W3110S.gb/2109184‑2109245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑