Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2736224	2736697	474	5 [0]	[2] 53	pheL–[pheA]	pheL,[pheA]

AATTAATCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTGCGGC  >  W3110S.gb/2736694‑2736759     |                                                              aaTTAATCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTg      >  1:1365842/1‑62 (MQ=255) aaTTAATCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTACCATCTTg      >  1:1318025/1‑62 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCTGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1062147/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:768346/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:432840/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:45223/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:499541/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:549759/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:557974/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:58378/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:708777/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:710272/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:71714/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:72150/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:737389/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:292744/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:76844/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:768851/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:796565/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:799485/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:818979/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:908931/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:919296/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:940275/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:948945/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:960838/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:963405/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:997803/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:136067/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1112733/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1119097/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1160155/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1228184/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1249218/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1259358/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1268915/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1302943/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1337232/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1340722/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1345939/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1348373/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:397570/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1395531/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1423532/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:1449605/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:18310/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:203294/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:205137/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:261825/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:261865/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTgcggc  <  1:282835/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCAATCTTgcggc  <  1:455468/62‑1 (MQ=255)     aaTCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCCTATTCCCATCTTgcggc  <  1:220095/62‑1 (MQ=255)     |                                                              AATTAATCCGCACTCAGCACGCATCGCTTTTCTCGGCCCCAAAGGTTCTTATTCCCATCTTGCGGC  >  W3110S.gb/2736694‑2736759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑