Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2737285	2737443	159	46 [0]	[0] 61	pheA	fused chorismate mutase P and prephenate dehydratase

CAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCAA  >  W3110S.gb/2737444‑2737505 |                                                              cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:673265/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:363377/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:371153/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:378483/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:393103/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:425553/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:472190/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:499385/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:535089/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:540731/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:54149/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:587940/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:607387/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:617992/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:647167/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:647885/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:324912/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:678943/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:721963/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:724807/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:742240/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:744679/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:753965/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:755647/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:787175/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:814057/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:890431/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:900747/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:910238/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:943957/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:959694/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1336600/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1036203/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1062700/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1101832/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:110932/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1121482/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:11664/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1191337/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1197908/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1229923/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:125079/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1279086/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1295297/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1302065/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1009763/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:13428/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:136760/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1391576/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1444582/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:15064/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:18758/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:241438/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:248242/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:259112/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:262835/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:27656/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:288809/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:293963/62‑1 (MQ=255) cAATCTTGAATCAGCGGAAATACAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:183054/62‑1 (MQ=255) cAATCTTGAAACAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCaa  <  1:1185199/62‑1 (MQ=255) |                                                              CAATCTTGAATCAGCGGAAATGCAAAAAGCATTGAAAGAGTTAGGGGAAATCACCCGTTCAA  >  W3110S.gb/2737444‑2737505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑