Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3076593	3077051	459	4 [0]	[3] 30	cmtA	predicted fused mannitol‑specific enzyme IIBC component of PTS

TTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATG  >  W3110S.gb/3077040‑3077112             |                                                             ttGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCcgc             <  1:911669/62‑1 (MQ=255) ttGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCcgc             <  1:1208599/62‑1 (MQ=255)  tGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCcgc             <  1:286175/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGGAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:159783/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:246798/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:843091/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:802922/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:797076/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:689224/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:630892/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:615179/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:53200/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:520783/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:477920/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:34959/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:342125/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:269776/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:1081845/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:23396/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:1452495/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:1442052/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:1362572/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:1325740/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:1271860/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:1254318/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:123052/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:1230177/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:1208959/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATg  <  1:10834/61‑1 (MQ=255)             acCGCCGGGCCGATAACTTCAAAACCCAGCAGAAAAAGGAGCATCCCCGCGATACCTAATg  <  1:1206638/61‑1 (MQ=255)             |                                                             TTGGCAATTAACACCGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAGGAGCATCCCCGCGATACCTAATG  >  W3110S.gb/3077040‑3077112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑