Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3277846	3277966	121	30 [0]	[0] 51	agaR	DNA‑binding transcriptional dual regulator

AGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGA  >  W3110S.gb/3277967‑3278028 |                                                              aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGAt               >  1:1426240/1‑49 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCTCCGTAAAAAg   >  1:876481/1‑61 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGc            >  1:447038/1‑52 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTaaaaa    >  1:305176/1‑60 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTaaa      >  1:813629/1‑58 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAg   >  1:185475/1‑61 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAg   >  1:865144/1‑61 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAg   >  1:482902/1‑61 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:609086/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:369561/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:374509/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:382207/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:396113/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:537975/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:564694/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:574743/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:601013/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:961348/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:711113/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:78661/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:874915/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:88765/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:919615/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:923098/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:927004/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:941023/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1060600/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1286333/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1062315/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1066310/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1095094/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1109064/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1150580/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1180925/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1186703/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1227679/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1237079/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1246164/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1268605/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:361270/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1306204/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1318871/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1362044/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1407446/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1416728/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1430123/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1440457/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:1462119/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:169000/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:169074/1‑62 (MQ=255) aGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGa  >  1:308173/1‑62 (MQ=255) |                                                              AGAAACAGCATATCGAAGTGGTAATTTTGCAGCGATTGCTCAGCCTGATCGCCGTAAAAAGA  >  W3110S.gb/3277967‑3278028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑