Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3661487	3661988	502	18 [0]	[0] 48	[rffA]–[rffC]	[rffA],[rffC]

GTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGT  >  W3110S.gb/3661989‑3662050 |                                                              gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:739854/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:379059/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:387593/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:407139/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:451989/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:47421/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:484631/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:530010/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:580467/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:586916/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:692374/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:727458/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:362311/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:770795/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:788261/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:798550/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:846213/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:883124/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:898159/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:913580/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:946338/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:953246/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:96257/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:98160/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1312939/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1022031/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1044389/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1046141/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1103171/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:114451/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1155672/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1174274/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1184535/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1214175/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1227792/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1278576/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1010982/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1345040/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1373878/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1393673/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1451011/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:1452173/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:189803/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:259951/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:28123/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:300352/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:332062/62‑1 (MQ=255) gTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGt  <  1:355245/62‑1 (MQ=255) |                                                              GTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAGGGCATCCAGT  >  W3110S.gb/3661989‑3662050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑