Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3847429	3847547	119	47 [0]	[0] 8	htrL	hypothetical protein

GGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTG  >  W3110S.gb/3847548‑3847608 |                                                             gggCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTg  >  1:124896/1‑61 (MQ=255) gggCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTg  >  1:1340062/1‑61 (MQ=255) gggCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTg  >  1:316794/1‑61 (MQ=255) gggCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTg  >  1:333683/1‑61 (MQ=255) gggCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTg  >  1:355502/1‑61 (MQ=255) gggCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTg  >  1:357919/1‑61 (MQ=255) gggCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTg  >  1:41574/1‑61 (MQ=255) gggCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTg  >  1:675425/1‑61 (MQ=255) |                                                             GGGCAAAAATGCAGGCGCTGAGAATTTTCCTTTCAAGAAAATAGGTTTCCCTCCATTAGTG  >  W3110S.gb/3847548‑3847608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑