Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3858868	3858888	21	27 [0]	[0] 44	yibK	predicted rRNA methylase

CCGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGC  >  W3110S.gb/3858889‑3858950 |                                                              ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:552272/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:344563/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:362957/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:375978/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:41184/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:424814/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:46306/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:47068/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:493073/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:50410/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:547935/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:295633/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:55525/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:57327/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:62957/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:667575/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:784994/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:816713/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:816717/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:838972/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:910495/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:975109/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1365783/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1030363/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1075495/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1129436/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1142244/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1242577/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1304148/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1344774/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1356409/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1362424/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1364092/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1025507/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1386025/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1393759/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1404635/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1416406/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1418921/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:1460574/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:215182/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:25576/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:261429/62‑1 (MQ=255) ccGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGc  <  1:263279/62‑1 (MQ=255) |                                                              CCGCGTGTTTCCGGGCCGAACATCAGATAATCGCCATCCTGATAGCTTACGGCGCTGTGAGC  >  W3110S.gb/3858889‑3858950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑