Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4082783	4083021	239	44 [0]	[0] 53	rtcB	conserved hypothetical protein

CTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGC  >  W3110S.gb/4083022‑4083066 |                                             cTTTGTTGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:693591/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:675224/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:1040623/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:51853/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:538705/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:572905/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:573661/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:612078/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:612840/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:617503/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:628256/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:667225/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:667432/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:672952/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:486884/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:678833/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:68922/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:690495/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:704472/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:714355/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:716123/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:766086/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:778324/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:877031/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:911791/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:981692/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:1466723/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:1060707/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:110800/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:1129307/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:1139640/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:1154044/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:116063/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:1167407/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:1178851/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:1284569/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:1358825/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:1372233/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:1380583/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:138759/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:456780/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:159963/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:160384/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:229917/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:298909/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:320207/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:329361/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:333705/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:334591/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:337672/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGc  <  1:396253/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGTGGCCTAGGCGCAGCTTTTTGc  <  1:491172/45‑1 (MQ=255) cTTTGATGATTACCTGAAAGCCGGGGCCTGGGCGCAGCTTTTTGc  <  1:666267/45‑1 (MQ=255) |                                             CTTTGATGATTACCTGAAAGCCGTGGCCTGGGCGCAGCTTTTTGC  >  W3110S.gb/4083022‑4083066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑