Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4281837	4281935	99	66 [0]	[0] 42	soxR/yjcD	DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing/predicted permease

CGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACC  >  W3110S.gb/4281936‑4281985 |                                                  cgcgGAGCTAAACGTTTGCTTTTTTGGGACGCAGCAAATTGTCGCAAAcc  >  1:1318312/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTc         >  1:1120776/1‑43 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:606802/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:353084/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:470564/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:473281/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:49716/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:506443/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:538240/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:539892/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:545396/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:580854/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1047904/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:975057/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:639833/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:651494/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:720694/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:746871/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:74778/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:771638/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:920032/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:959204/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1330196/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1135961/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1157924/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1163695/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1167034/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1181610/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1204834/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1212458/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1235216/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:337403/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1376865/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1454575/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:1466616/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:162419/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:185960/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:201753/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:326543/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAcc  >  1:332774/1‑50 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAAc   >  1:158482/1‑49 (MQ=255) cgcgGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGACGCAAAcc  >  1:1169091/1‑50 (MQ=255) |                                                  CGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACC  >  W3110S.gb/4281936‑4281985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑