Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4305188	4305196	9	41 [0]	[0] 77	yjcQ	predicted multidrug efflux system component

TGCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGT  >  W3110S.gb/4305197‑4305258 |                                                              tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATcc                         >  1:462459/1‑39 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGTCCAACAGGAAAATCGGt  >  1:1166039/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCTAACAGGAAAATCGGt  >  1:406531/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCgg   >  1:774299/1‑61 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:332551/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:461923/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:430146/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:429425/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:410587/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:401778/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:39942/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:332960/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:53763/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:331557/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:314221/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:305837/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:301513/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:300753/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:250754/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:227096/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:210133/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:736691/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:992497/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:977973/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:924316/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:9029/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:872118/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:861319/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:814607/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:758957/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:465895/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:678960/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:678754/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:664884/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:656989/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:644940/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:591717/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:575772/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:198692/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1125726/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1008034/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1176895/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1173160/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:115733/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1155430/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1143098/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1131349/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1129263/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1232454/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1124142/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1108627/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:11044/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1095915/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1074165/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1047246/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1041009/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1008806/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1420821/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:197273/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:172563/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:167018/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:148027/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1460776/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1458940/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1445440/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1435663/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:12710/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1411090/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1402618/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1401992/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1393466/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1389207/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1276000/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGt  >  1:1272476/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCAAACAGGAAAATCGGt  >  1:609135/1‑62 (MQ=255) tgCCGATATAAGAAGAGCGTTCAGAGCTGCTGGCAATCCaag                      >  1:1178474/1‑40 (MQ=255) tgCCGATATAAGAAGAACGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAAACGGt  >  1:16739/1‑62 (MQ=255) |                                                              TGCCGATATAAGAAGAGCGTTCAGAGCTGGTGGCAATCCATGCGCCCAACAGGAAAATCGGT  >  W3110S.gb/4305197‑4305258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑