Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4501781	4501810	30	24 [0]	[0] 42	intB	predicted integrase

TAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATG  >  W3110S.gb/4501811‑4501872 |                                                              tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTcagc                      >  1:291424/1‑42 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTca                        >  1:738545/1‑40 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTc                         >  1:574660/1‑39 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACCGCCATCATg  >  1:1445398/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCcatcat   >  1:1431146/1‑61 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCcatcat   >  1:298518/1‑61 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCcatcat   >  1:1448521/1‑61 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCcatcat   >  1:1446796/1‑61 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:70362/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:605323/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:599818/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:704983/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:265735/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:739374/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:549105/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:773224/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:892699/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:535895/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:526599/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:506776/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:505978/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:481451/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:946069/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:994051/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1339479/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1080879/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1083491/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:109636/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1150145/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1174702/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1178991/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1198169/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1261433/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:394818/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1406731/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1446106/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1464604/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1465381/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:209856/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:254192/1‑62 (MQ=255) tAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1005200/1‑62 (MQ=255) tAGAAAAGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATg  >  1:1351375/1‑62 (MQ=255) |                                                              TAGAAATGTCTGGACGTCTTGAAGTGGCCGCTCGTCTTCAGCAGCGCACTACAGCCATCATG  >  W3110S.gb/4501811‑4501872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑