Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	60945	60997	53	103 [0]	[0] 45	hepA	RNA polymerase‑associated helicase protein

TCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCATGTT  >  W3110S.gb/60998‑61059 |                                                              tCCGAGAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:1316750/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGc             >  1:276126/1‑51 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCTCGATCAtgtt  >  1:554032/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:616659/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:400639/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:419188/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:487428/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:495201/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:515016/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:599694/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:604654/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:609192/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:366471/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:617201/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:631346/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:633031/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:748062/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:764025/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:766354/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:95601/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:964182/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:981841/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:161707/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:1084307/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:1186371/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:1199417/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:1201664/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:1406761/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:141349/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:1416675/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:159513/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:1036992/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:173814/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:183585/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:195352/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgtt  >  1:298594/1‑62 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgt   >  1:177446/1‑61 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgt   >  1:1421422/1‑61 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgt   >  1:195531/1‑61 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgt   >  1:22504/1‑61 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgt   >  1:281593/1‑61 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtgt   >  1:96044/1‑61 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCAtg    >  1:1224748/1‑60 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATCATCGGAAGGCGTCAGCACGATCAtgt   >  1:413561/1‑61 (MQ=255) tCCGACAGGCCAGGGAAGTCCGGCACCAGCATATAATCGGACGGCGTCAGCACGATCAtgtt  >  1:577811/1‑62 (MQ=255) |                                                              TCCGACAGGCCAGGGAAGTCCGGCACCAGCATATGATCGGACGGCGTCAGCACGATCATGTT  >  W3110S.gb/60998‑61059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑