Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	164114	164667	554	72 [0]	[0] 38	[hrpB]	[hrpB]

CTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGC  >  W3110S.gb/164668‑164729 |                                                              ctGTCTTGTAACAGAGGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:385624/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAg   >  1:1007465/1‑61 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAg   >  1:436707/1‑61 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:645152/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:409991/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:420751/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:46944/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:501789/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:604214/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:619974/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:280921/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:646102/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:768826/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:786254/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:839957/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:863251/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:872961/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:915649/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:986492/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:993897/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:1291425/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:1013526/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:1052026/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:1080028/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:1097775/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:1111928/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:114162/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:1206887/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:262729/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:1299562/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:1348093/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:1469875/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:168783/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:19086/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:228515/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:245159/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc  >  1:252558/1‑62 (MQ=255) ctGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGACTGAATATTGCGGAGAAAAAGc  >  1:1079/1‑62 (MQ=255) |                                                              CTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGC  >  W3110S.gb/164668‑164729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑