Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1140198	1140319	122	6 [0]	[0] 32	flgK	flagellar hook‑filament junction protein 1

TAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAT  >  W3110S.gb/1140320‑1140380 |                                                             tAACGCGGAAGACCCGGCTGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGGGAAt  <  1:194035/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:839333/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:556435/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:556838/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:596973/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:644981/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:700514/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:710360/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:721473/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:5433/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:869895/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:892408/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:947473/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:960882/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:96388/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:981074/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:993963/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:1000330/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:489512/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:385201/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:258589/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:187025/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:186798/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:1425929/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:1421520/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:1302731/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:129444/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:1245844/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:1159374/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:1131318/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:1017456/61‑1 (MQ=255) tAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAt  <  1:1005309/61‑1 (MQ=255) |                                                             TAACGCGGAAGACCCGGCAGCGCGCCAGGCGCTGATTGGGAAATCAGAAGGATTGGTGAAT  >  W3110S.gb/1140320‑1140380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑