Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1172522	1172553	32	40 [0]	[3] 68	mfd	transcription‑repair coupling factor

TGGTGAGATCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCAA  >  W3110S.gb/1172547‑1172610        |                                                         tggTGAGATCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTcccta     >  1:673084/1‑59 (MQ=255) tggTGAGATCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTcccta     >  1:1265029/1‑59 (MQ=255)     gagaTCTTCCTGCGACGGCGCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:855009/60‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:53367/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:733886/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:661956/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:579795/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:5753/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:573107/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:761896/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:533647/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:526844/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:461072/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:453547/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:449138/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:446709/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:439081/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:433724/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:754360/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:426594/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:794464/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:809908/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:837478/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:879866/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:88881/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:903459/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:909821/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:912913/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:924613/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:926468/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:952876/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:955913/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:966955/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:984009/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1183696/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1000036/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:135440/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1350310/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1290488/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1290467/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:125912/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1254735/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1190425/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1376212/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1167146/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1161194/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1139361/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1106916/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1096607/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1083067/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1075584/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1422310/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:420016/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:404944/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:400971/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:381633/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:371690/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:307779/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:276438/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:204718/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:20122/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:166366/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1454637/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1442678/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:1413/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCAGCGACGGCGTTTTCCAGCaa  <  1:1156775/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGAGCATCGACGGCGTTTTCCAGCaa  <  1:30653/57‑1 (MQ=255)        aTCTTCCAGCGACGGCTCGCGTCCGGC‑TTCAGTGCATCGACGGCGTTTTCCAGCaa  <  1:447429/56‑1 (MQ=255)        |                                                         TGGTGAGATCTTCCAGCGACGGCTCGCGTCCGGCTTTCAGTGCATCGACGGCGTTTTCCAGCAA  >  W3110S.gb/1172547‑1172610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑