Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1201563	1201648	86	41 [0]	[0] 29	intE	predicted integrase

GACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAC  >  W3110S.gb/1201649‑1201706 |                                                          gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATAcg                  >  1:1114220/1‑42 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAata           >  1:1105153/1‑49 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCGCCTAAc  >  1:1266195/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:16969/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:947764/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:765666/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:738091/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:722209/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:679583/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:674651/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:615131/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:614236/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:521757/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:392295/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:339883/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:238834/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:224655/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:215951/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:1008437/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:146457/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:1281102/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:1267446/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:1086274/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:1084489/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:1068255/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:1066218/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:1057305/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:1052289/1‑58 (MQ=255) gACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAc  >  1:1049058/1‑58 (MQ=255) |                                                          GACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAAC  >  W3110S.gb/1201649‑1201706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑