Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1413677	1413738	62	41 [1]	[0] 48	[intR]	[intR]

GCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGC  >  W3110S.gb/1413739‑1413800 |                                                              gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:593413/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:103690/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:289560/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:371669/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:377403/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:388249/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:456612/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:49200/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:527117/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:550604/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:552707/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:586883/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:272244/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:690616/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:707740/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:770812/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:814403/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:871274/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:879249/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:889092/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:902232/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:9422/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:960605/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:161401/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1100842/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1113446/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1129004/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1140299/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1154296/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1155678/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1156378/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:118515/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1212588/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1220550/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:124483/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1289186/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1298940/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1326476/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1344429/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1387109/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1427193/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1438934/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:143959/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:1444240/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTgcg   >  1:670391/1‑61 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCAgcgc  >  1:1266104/1‑62 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATCAATACACATACCGTAAAtt                   >  1:454900/1‑45 (MQ=255) gCTATCTGTTCGTCGTTCATGTCATAAATCCACATACCGTAAATTTCATACACCATCTgcgc  >  1:192068/1‑62 (MQ=255) |                                                              GCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGC  >  W3110S.gb/1413739‑1413800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑