Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1433929	1435359	1431	56 [0]	[0] 51	[stfR]–[pinR]	[stfR],tfaR,[pinR]

ATCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTTCATAT  >  W3110S.gb/1435360‑1435420 |                                                             atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:816307/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:432011/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:490554/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:497246/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:547518/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:600748/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:61381/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:694818/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:695007/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:748884/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:780815/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:790579/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:790926/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:365155/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:827978/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:847278/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:849637/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:856359/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:8943/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:904127/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:930375/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:931624/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:938180/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:949284/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:980520/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:983131/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1425541/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1030905/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1126416/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1135463/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1192579/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1223953/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:126802/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1291535/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1350808/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1376391/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1398572/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1402272/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1406984/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1027617/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1437251/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:1440280/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:148669/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:15778/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:184534/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:209230/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:273136/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:298312/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:306859/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:31197/61‑1 (MQ=35) atCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTtcatat  <  1:352073/61‑1 (MQ=35) |                                                             ATCCGACAGTAAGCAAAAATTCGAGACATAGTGAGACTCTATACGAAATTGGTGTTCATAT  >  W3110S.gb/1435360‑1435420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑