Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1656561	1656911	351	6 [3]	[0] 47	[rspA]	[rspA]

ACCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTG  >  W3110S.gb/1656912‑1656971 |                                                            acCATACAAGTATAAAGATCGTAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:60938/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGATTGATCACAAAAAAAGGCGTATATTTg  <  1:1320488/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:605209/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:347634/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:362596/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:413380/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:452204/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:478370/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:47901/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:537567/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:548200/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:583308/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:597385/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:344460/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:635496/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:64123/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:738527/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:743181/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:796070/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:803470/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:81665/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:851537/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:924939/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:949369/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1233658/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1004647/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1004694/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1018466/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1060527/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1078184/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1112643/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1160506/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1172253/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:121249/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1220802/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1002140/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1282454/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:132118/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:132334/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:1351389/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:135153/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:172142/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:180364/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:213606/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:235440/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg  <  1:343352/60‑1 (MQ=255) acCATACAAGTATAAAGATCGAAAAAAGCCGGAGTCATCACAAAAAAAGGCGTATATTTg  <  1:665172/60‑1 (MQ=255) |                                                            ACCATACAAGTATAAAGATCGAAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTG  >  W3110S.gb/1656912‑1656971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑