Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1904673	1904676	4	8 [0]	[0] 57	manX	fused mannose‑specific PTS enzyme IIAB components

GTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAT  >  W3110S.gb/1904677‑1904738 |                                                              gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:68096/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:349032/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:376/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:419540/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:426435/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:458082/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:492852/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:542949/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:553285/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:582174/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:597323/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:623877/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:624089/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:635458/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:669997/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:335491/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:683069/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:721716/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:733610/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:745083/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:745643/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:752306/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:832167/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:847527/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:852396/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:874959/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:892831/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:916803/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:93219/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1242488/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1018628/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1026852/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1034301/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1036134/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1063454/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1089707/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1165328/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1167330/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1171358/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1196663/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1199243/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1227672/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1235483/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1006779/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1270580/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:127850/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1362270/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1390711/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1400550/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1406340/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1438103/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:1447756/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:191004/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:195054/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:195335/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:320834/62‑1 (MQ=255) gTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAt  <  1:325443/62‑1 (MQ=255) |                                                              GTTTCCACCGATCCGAAACTGAAAATGATGGATCTGATCAGCAAAATCGATAAGTAACGTAT  >  W3110S.gb/1904677‑1904738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑