Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1964556	1964745	190	20 [0]	[0] 65	[flhE]–[flhA]	[flhE],[flhA]

CGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAGCG  >  W3110S.gb/1964746‑1964807 |                                                              cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGTCAATAATGGTCGCAgcg  >  1:97034/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGCCAATAATGGTCGCAgcg  >  1:778513/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGc      >  1:893406/1‑58 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:724172/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:475433/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:712242/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:703550/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:693784/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:688131/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:649366/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:641875/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:635111/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:625512/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:591421/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:536342/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:519698/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:515448/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:455048/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:727820/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:794275/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:810131/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:817483/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:829325/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:862140/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:883308/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:904332/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:913102/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:917937/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:963462/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:965988/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:97650/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:98108/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1422733/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1028355/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1090373/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1090951/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1113025/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1119341/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1129186/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1179688/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1182644/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:11920/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1202746/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1264638/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1272744/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:128828/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1400382/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1408035/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:262643/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:422155/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:416582/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:295879/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:271947/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:265041/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:263739/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1000081/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:255912/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:239891/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:178487/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1467064/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1454681/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1451054/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1433098/1‑62 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAgc   >  1:587614/1‑61 (MQ=255) cGACAGGACCACTAACTGCGGCAAGCTGCGACGCAGGAAGCGAGACAATAATGGTCGCAgcg  >  1:1046210/1‑62 (MQ=255) |                                                              CGACAGGACCACTAACTGCGGCAAGCTGCGGCGCAGGAAGCGAGACAATAATGGTCGCAGCG  >  W3110S.gb/1964746‑1964807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑