Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1974869	1974896	28	23 [0]	[0] 36	cheW	purine‑binding chemotaxis protein

CTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGATA  >  W3110S.gb/1974897‑1974958 |                                                              cTGGCGTGTTCGCAATCCGTTTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:407845/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:592723/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:356269/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:386867/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:435477/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:460889/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:518856/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:569864/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:578767/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:353338/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:648105/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:66331/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:735525/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:830922/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:85331/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:855638/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:926955/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:976291/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:1336250/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:1023491/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:1026536/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:1028947/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:1043914/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:1105934/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:1147695/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:1247413/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:1298746/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:101629/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:1416503/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:1457692/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:1471835/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:175834/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:187357/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:250118/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:26247/62‑1 (MQ=255) cTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGata  <  1:281270/62‑1 (MQ=255) |                                                              CTGGCGTGTTCGCAATCCGTGTTACCTGATCGTAGCCACGGATCTCCTGCACTTTCAGGATA  >  W3110S.gb/1974897‑1974958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑