Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2026004	2026035	32	8 [0]	[0] 23	fliR/rcsA	flagellar export pore protein/DNA‑binding transcriptional co‑regulator with RcsB

GTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAGG  >  W3110S.gb/2026036‑2026097 |                                                              gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:444079/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:864467/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:762644/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:730536/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:643086/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:631699/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:624284/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:622747/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:605094/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:554301/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:497188/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:449925/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:1062760/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:341906/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:29581/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:182442/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:156194/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:135708/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:1350260/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:1291141/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:1196818/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:1154638/62‑1 (MQ=255) gttCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAgg  <  1:1135842/62‑1 (MQ=255) |                                                              GTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAGG  >  W3110S.gb/2026036‑2026097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑