Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2159702	2159776	75	17 [0]	[0] 60	mdtB	multidrug efflux system, subunit B

GCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTC  >  W3110S.gb/2159777‑2159838 |                                                              gCTCAATTGCCAAAATTGAGCAGCGTTTTGcgccg                             >  1:617415/1‑35 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATc                    >  1:1182553/1‑44 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGtt   >  1:80338/1‑61 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGtt   >  1:1307945/1‑61 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGtt   >  1:764385/1‑61 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGtt   >  1:268521/1‑61 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGtt   >  1:302418/1‑61 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:476365/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:489072/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:69796/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:49626/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:463782/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:50653/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:519613/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:446749/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:549701/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:587656/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:430121/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:647133/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:660497/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:346598/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:707897/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:722580/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:75507/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:788450/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:807729/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:863373/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:9045/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:930800/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:976837/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:984580/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:991077/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1334519/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1019341/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1021306/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1053108/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1065774/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1078045/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1162110/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1182750/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1186945/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1205680/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1206357/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1210243/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1260627/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:131223/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:369646/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1336758/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1385734/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1391498/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1409231/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:141067/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1437388/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:174088/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:193624/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:226000/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:286360/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:314083/1‑62 (MQ=255) gCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:1011091/1‑62 (MQ=255) gCTCAATTGCCAAAACTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTc  >  1:678751/1‑62 (MQ=255) |                                                              GCTCAATTGCCAAAATTGAGCAGCGTTTTGCGCCGCTCTCCATCAACCATCTGGATCAGTTC  >  W3110S.gb/2159777‑2159838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑