Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2443642	2443673	32	12 [0]	[0] 42	flk	predicted flagella assembly protein

CCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTC  >  W3110S.gb/2443674‑2443735 |                                                              ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:677393/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:1016237/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:377567/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:387319/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:486460/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:494494/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:591013/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:644303/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:649533/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:652537/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:670672/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:375945/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:686060/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:7083/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:74897/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:754567/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:754647/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:780848/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:795162/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:807706/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:827930/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:1408884/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:1068725/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:1069809/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:1088187/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:1102790/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:1154433/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:122096/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:1263789/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:1305169/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:1306277/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:1403750/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:375000/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:1420841/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:145318/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:172464/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:186320/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:188148/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:2050/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:218226/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTc  <  1:224661/62‑1 (MQ=255) ccATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTAATTACGTCTGGGGATTAATCGTc  <  1:379940/62‑1 (MQ=255) |                                                              CCATTCTGCCCGCCAGCTTTTAGCGCAATTAGGGGAGTATTTACGTCTGGGGAATAATCGTC  >  W3110S.gb/2443674‑2443735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑