Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | W3110S.gb | 1,538,838 | C→T | G62G (GGG→GGA) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 1,538,838 | 0 | C | T | 99.2% | 334.6 / NA | 122 | G62G (GGG→GGA) | narW | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (121/0); minor base A (1/0); total (122/0) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 122 total aligned reads displayed.
CGAACAGCAGCAGCGACGTGGTGCGCCCGCGGTCAAACACTTCGCACCATTCGGCCTGTTTA > W3110S.gb/1538813‑1538874 | cGAACAGCAGCAGCGATGTGGTACGTCCACGGTTAAACACTTCGCACCATTCGGCCTGTTTa > 1:120994/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAACCACtt > 1:332749/1‑42 (MQ=19) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACCCTTCGCACCATTCGGCCTGTTTa > 1:237793/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACt > 1:911523/1‑41 (MQ=25) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGttt > 1:1287220/1‑61 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGttt > 1:1258337/1‑61 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGttt > 1:764457/1‑61 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:521001/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:501112/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:505298/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:636208/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:555852/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:575286/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:581341/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:58166/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:587339/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:692891/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:495652/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:486148/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:465933/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:458665/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:444469/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:415098/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:39192/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:389766/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:38369/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:383514/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:367008/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:346843/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:82038/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1001136/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:970658/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:966051/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:955858/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:92317/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:919986/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:916338/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:913728/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:866111/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:854722/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:850345/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:648042/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:794243/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:792315/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:785871/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:768418/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:746216/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:727052/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:708499/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:702953/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:974193/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:672605/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1205602/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1397675/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1389281/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1349122/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1343679/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:131263/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1306020/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1304270/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1303710/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1289074/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1277017/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1262594/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1405570/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1197921/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1183356/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1179305/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1164494/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1158533/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1138/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1092320/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:106358/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1047537/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1040238/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1033994/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1457171/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:327524/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:327074/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:296820/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:285860/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:277633/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:267165/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:259496/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:258957/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:253178/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:240776/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:239191/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:23883/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:200882/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:193597/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:188926/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:186233/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:174607/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:170899/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:155910/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:1460624/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:342870/1‑62 (MQ=255) cGAACAGCAGCAGCGATGTGGTACGACCACGGTCAAACACTTCGCACCAATCGGCCTGtt > 1:363113/1‑60 (MQ=255) cGAACAGAAGCAGCGATGTGGTACGTCCACGGTCAAACACTTCGCACCATTCGGCCTGTTTa > 1:643103/1‑62 (MQ=255) | CGAACAGCAGCAGCGACGTGGTGCGCCCGCGGTCAAACACTTCGCACCATTCGGCCTGTTTA > W3110S.gb/1538813‑1538874 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |