Predicted mutation
evidence seq id position mutation annotation gene description
RA W3110S.gb 2,076,612 T→C T979T (ACT→ACC flu → antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb2,076,6120TC96.5% 291.5 / ‑1.5 113T979T (ACT→ACCfluantigen 43 (Ag43) phase‑variable biofilm formation autotransporter
Reads supporting (aligned to +/- strand):  ref base T (0/4);  new base C (109/0);  total (109/4)
Fisher's exact test for biased strand distribution p-value = 1.55e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.01e-01

Only 100 of 113 total aligned reads displayed.

GTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACTTCCACTGCAGGCAGCGGGATGACGTTCTCTCCCTCACAGAATGGCACA  >  W3110S.gb/2076562‑2076654
                                                  |                                          
gTTATCCGCACCTTCAGCTCCCGGGGTTATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:567394/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTTGGGACCTCCACCGCAGGCAGCgg                                 >  1:834026/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:425099/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:590387/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:907354/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:572472/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:566975/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:559721/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:514889/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:501808/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:448389/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:918076/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:431890/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:625556/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:425030/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:423337/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:40602/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:390587/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:929802/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:930901/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:373654/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:365131/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:344294/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:325492/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:773077/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:882442/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:882233/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:880645/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:884706/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:863548/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:861620/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:818142/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:810426/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:802362/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:795027/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:306682/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:766730/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:732379/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:730689/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:720482/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:700385/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:699502/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:696214/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:689539/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:687546/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:650552/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1133937/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1297619/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:974017/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:128134/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1269576/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1265732/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:124645/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1234850/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1203842/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1178545/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1165379/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1138175/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1298096/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1128637/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1118486/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:110897/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:977337/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1091154/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:108137/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1066289/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:106564/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1042152/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1005771/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1454889/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:29654/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:294646/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:957993/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:272977/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:247409/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:240793/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:231543/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:211651/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:182274/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1469274/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1444786/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:144173/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1383690/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1360189/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1360076/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1352503/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:961070/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1328275/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:132200/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCgg                                 >  1:1302978/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCg                                  >  1:1006977/1‑61 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCg                                  >  1:876964/1‑61 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGCAGGCAGCg                                  >  1:1290227/1‑61 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGGACCTCCACCGAAGGCAGCgg                                 >  1:382369/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGATATGCGTGTGGGAACCTCCACCGCAGGCAGCgg                                 >  1:379719/1‑62 (MQ=255)
gTTATCCGCACCTTCAGCTCCCGGGGTGAAATGCGTGTGGGGACCTCCACCgcaggca                                     >  1:289852/1‑58 (MQ=255)
                               tGCGTGTGGGGACTTCCACTGCAGGCAGCGGGATGACGTTCTCTCCCTCACAGAATGGcaca  <  1:579852/62‑1 (MQ=255)
                               tGCGTGTGGGGACTTCCACTGCAGGCAGCGGGATGACGTTCTCTCCCTCACAGAATGGcaca  <  1:432057/62‑1 (MQ=255)
                               tGCGTGTGGGGACTTCCACTGCAGGCAGCGGGATGACGTTCTCTCCCTCACAGAATGGcaca  <  1:1102155/62‑1 (MQ=255)
                                  gtgtGGGGACTTCCACTGCAGGCAGCGGGATGACGTTCTCTCCCTCACAGAATGGcaca  <  1:1338805/59‑1 (MQ=255)
                                                  |                                          
GTTATCCGCACCTTCAGCTCCCGGGGAGATATGCGTGTGGGGACTTCCACTGCAGGCAGCGGGATGACGTTCTCTCCCTCACAGAATGGCACA  >  W3110S.gb/2076562‑2076654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: