| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 2,325,144 | A→G | L144L (TTA→TTG) | atoS → | sensory histidine kinase in two‑component regulatory system with AtoC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,325,144 | 0 | A | G | 78.9% | 205.2 / 40.3 | 123 | L144L (TTA→TTG) | atoS | sensory histidine kinase in two‑component regulatory system with AtoC |
| Reads supporting (aligned to +/- strand): ref base A (26/0); new base G (97/0); total (123/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 | |||||||||||
Only 100 of 123 total aligned reads displayed.
CCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTG > W3110S.gb/2325109‑2325199 | cccggTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:798906/4‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGt > 1:919946/1‑38 (MQ=37)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTcaggcaggcag > 1:1140798/1‑54 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTcaggcag > 1:1287521/1‑50 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTcag > 1:150755/1‑46 (MQ=39)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCCGGCAGGCAGGTGcgcg > 1:548671/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTgcgc > 1:683928/1‑60 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTgcgc > 1:742221/1‑60 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTgcgc > 1:775588/1‑60 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:390634/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:552421/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:530394/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:516267/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:512750/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:487211/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:434253/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:669603/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:382448/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:358200/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:341075/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:338373/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:317267/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:285413/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:282972/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1020804/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:260454/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:237198/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:883549/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:990196/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:98989/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:989110/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:96292/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:950046/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:948610/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:948278/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:943079/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:932437/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:603074/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:868641/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:846275/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:750182/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:746295/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:741370/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:673038/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:264846/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:656506/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:61914/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1125545/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1089505/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1307722/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1289274/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1091465/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1115193/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1116980/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:126356/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1123702/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1311335/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1255042/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1240430/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:121886/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1212482/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1198355/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1137784/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1147309/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1354253/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:171515/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:160615/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1053982/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1440928/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1428612/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1408704/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1382770/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1321004/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1352403/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1350600/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1055304/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1337730/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1337516/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1072751/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGagcg > 1:537850/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCACGCAGGTGcgcg > 1:1054729/1‑61 (MQ=255)ccTGGTCGCGAAGTCATGCGTACAAATACCCCGTTGGTTTATTCAGGCAGGCAGGTGcgcg > 1:1242759/1‑61 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCAtt > 1:164783/1‑61 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCAtt > 1:402487/1‑61 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCAtt > 1:1314917/1‑61 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCAtt > 1:1272863/1‑61 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:60003/1‑62 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:144303/1‑62 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:1389679/1‑62 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:1057672/1‑62 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:498969/1‑62 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:55620/1‑62 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:1148576/1‑62 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:891191/1‑62 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:629147/1‑62 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:653651/1‑62 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:1185643/1‑62 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:1183150/1‑62 (MQ=255) cccTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATATTGAATTCAATGCTCCCCATTg > 1:1088512/1‑62 (MQ=255) cccTTTAGTTTATTCAAGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:784761/1‑62 (MQ=255) | CCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTG > W3110S.gb/2325109‑2325199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |