| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 2,369,174 | G→C | intergenic (‑229/‑50) | yfaZ ← / → yfaO | predicted outer membrane porin protein/predicted NUDIX hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,369,174 | 0 | G | C | 95.1% | 332.9 / 5.3 | 122 | intergenic (‑229/‑50) | yfaZ/yfaO | predicted outer membrane porin protein/predicted NUDIX hydrolase |
| Reads supporting (aligned to +/- strand): ref base G (6/0); new base C (116/0); total (122/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 | |||||||||||
Only 100 of 122 total aligned reads displayed.
TTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGC > W3110S.gb/2369152‑2369227 | ttACTGTCACTTTCACATATTTCTGAGTTACCGTATtctc > 1:1163848/1‑40 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCa > 1:420937/1‑41 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCa > 1:1095805/1‑41 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATg > 1:414884/1‑43 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTttatttat > 1:1397644/1‑59 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTtata > 1:942194/1‑60 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTtata > 1:1459328/1‑60 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:488379/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:61684/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:606761/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:605707/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:554850/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:545868/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:544818/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:514954/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:509085/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:499615/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:491850/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:490094/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:676911/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:478045/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:467576/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:464041/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:455586/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:454548/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:450462/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:413721/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:847961/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:973132/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:946207/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:944103/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:899137/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:893160/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:884589/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:873370/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:870695/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:859425/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:854844/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:850641/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:628841/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:830163/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:81763/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:808518/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:797653/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:792471/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:730443/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:69095/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:688218/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:683394/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:411383/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:637192/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:122423/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:412977/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1370625/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1369691/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1369644/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1349368/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1327337/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:131963/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1298119/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:128682/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1242059/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1241143/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1372025/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1187333/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1185928/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1150928/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1115333/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1114611/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1095994/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:108855/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:106853/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:106700/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1027317/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1019748/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:24456/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1016747/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:388842/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:383409/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:379263/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:36474/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:33950/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:331296/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:297678/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:278247/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:274402/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:254070/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:248234/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1380850/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:20307/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:187627/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:186447/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:149376/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1439476/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1419085/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1417839/1‑61 (MQ=255)ttACTGTCACTTTCACATATTTCTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATaa > 1:1416769/1‑61 (MQ=255) caTATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGc > 1:586425/1‑61 (MQ=255) caTATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGc > 1:1363719/1‑61 (MQ=255) caTATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGc > 1:656251/1‑61 (MQ=255) | TTACTGTCACTTTCACATATTTGTGAGTTACCGTATTCTCATGGTTTCTTTTTATTTATAAGGAATATCCCTGTGC > W3110S.gb/2369152‑2369227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |