Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | W3110S.gb | 4,083,433 | A→G | E365E (GAA→GAG) | rtcB → | conserved hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 4,083,433 | 0 | A | G | 97.5% | 340.1 / ‑1.7 | 122 | E365E (GAA→GAG) | rtcB | conserved hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (0/118); minor base T (0/3); total (0/122) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 |
Only 100 of 122 total aligned reads displayed.
CAGCGTGGAAGATCAAATTCGTGCCACCGCGCATGTGGAATGCCGTAAAGATGCCGAAGTGA > W3110S.gb/4083394‑4083455 | cAGTGTGGAATATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1226596/62‑1 (MQ=255) cAGTGTGGAAGATCAGATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1346250/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGATTGCCGTAAAGATGCCGAGGTGa < 1:1044945/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGATTGCCGTAAAGATGCCGAGGTGa < 1:585129/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCTAGGTGa < 1:785037/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:400802/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:632310/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:594080/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:548195/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:547412/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:50648/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:467680/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:419374/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:415582/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:404344/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:679184/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:375852/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:350570/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:344804/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:332088/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:321880/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:843293/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:303502/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:103051/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:228955/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:870521/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:762326/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:842610/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:841124/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:837840/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:837741/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:836789/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:831956/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:791257/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:782279/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:77618/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:770794/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:642751/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:760359/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:756082/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:754661/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:729094/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:726102/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:71706/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:716840/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:716589/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:709818/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:22075/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1136299/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1316741/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1316620/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:126628/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:968462/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1246496/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:974834/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1223654/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:121926/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1197419/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1138574/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1317488/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1124738/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1124334/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1102759/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1101733/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1095939/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1086421/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1074744/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1047908/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1041777/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:976524/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1325641/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:197085/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:186527/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:183639/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:170204/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:156310/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1437468/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1430577/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1430270/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1430161/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:142395/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1423562/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:138083/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:951284/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1373625/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1356021/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1347696/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1340540/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1326260/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:887927/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGACTGCCGTAAAGATGCCGAGGTGa < 1:483568/62‑1 (MQ=255) cAGTGTGGAAGATCAAATCCGTGCCACCACGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1294266/62‑1 (MQ=255) agtgTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:298364/58‑1 (MQ=255) agtgTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:305230/58‑1 (MQ=255) agtgTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1375105/58‑1 (MQ=255) ccGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:221472/43‑1 (MQ=38) gTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1225003/42‑1 (MQ=38) gTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1031511/42‑1 (MQ=38) cgcgCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:224372/35‑1 (MQ=37) cgcgCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1261688/35‑1 (MQ=37) | CAGCGTGGAAGATCAAATTCGTGCCACCGCGCATGTGGAATGCCGTAAAGATGCCGAAGTGA > W3110S.gb/4083394‑4083455 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |