Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | W3110S.gb | 4,113,538 | T→A | T138S (ACC→TCC) | yrfF ← | predicted inner membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 4,113,538 | 0 | T | A | 77.0% | 143.6 / 36.8 | 74 | T138S (ACC→TCC) | yrfF | predicted inner membrane protein |
Reads supporting (aligned to +/- strand): ref base T (0/17); new base A (57/0); total (57/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.36e-17 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATCGTTGA > W3110S.gb/4113505‑4113570 | cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:60722/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:261610/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:317775/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:214183/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:189481/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:160979/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:69698/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:638152/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:638119/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:863784/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:421826/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:907776/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:915163/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:523542/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:1148223/61‑1 (MQ=255) cGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTAATCTCATc < 1:214921/61‑1 (MQ=255) gAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATc < 1:373931/57‑1 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCACCGGTATTCTCATCGTTGa > 1:720277/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGtt > 1:339762/1‑59 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:99556/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:596614/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:64459/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:562771/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:568765/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:584947/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:559313/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:606449/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:661864/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:662586/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:682121/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:714488/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:723927/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:789439/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:837178/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:840904/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:887015/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:898420/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:906709/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:936719/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:969401/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:976469/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:98212/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1002330/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1388899/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1042521/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1054826/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1165197/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1183543/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1186536/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1210725/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1219218/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1227886/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1243078/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1251956/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1312008/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1330246/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:527059/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:32193/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:51531/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:4903/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:432259/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:412683/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:391938/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:385882/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:339282/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1436113/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:271556/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:267948/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:256516/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:219287/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:15082/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATAGTTGa > 1:1272758/1‑61 (MQ=255) aGTGAAATAACCAGCGGCAGCGAATCGGAATGAATCAGTTCAACGGAATTCTCATCGTTGa > 1:109956/1‑61 (MQ=255) aGTGAAATAACCAGCGCCAGCGAATCGGAATGAATCAGTTCAACGGTATTCTCATCGTTGa > 1:1254577/1‑61 (MQ=255) | CGTTGAGTGAAATAACCAGCGGCAGCGAATCGGTATGAATCAGTTCAACGGTATTCTCATCGTTGA > W3110S.gb/4113505‑4113570 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |