| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 4,336,252 | G→C | G357G (GGG→GGC) | proP → | proline/glycine betaine transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 4,336,252 | 0 | G | C | 78.6% | 189.4 / 47.7 | 98 | G357G (GGG→GGC) | proP | proline/glycine betaine transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/21); new base C (0/77); total (0/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.70e-01 | |||||||||||
ATTAACAGTAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTA > W3110S.gb/4336217‑4336286 | aTTAACAGTAACTTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:766394/57‑1 (MQ=39)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATTCTGGCCGTGATc < 1:407540/57‑1 (MQ=38)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:431791/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:592441/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:575877/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:541053/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:532678/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:513379/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:481363/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:46222/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:449837/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:444902/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:432037/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:594611/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:417652/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:397144/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:384557/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:384475/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:37506/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:335862/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:329534/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:299493/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:27303/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:838931/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:991940/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:98822/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:948257/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:94139/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:900385/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:896926/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:879206/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:85355/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:844568/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:842794/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:34537/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:811376/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:80144/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:753730/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:747174/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:729280/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:720644/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:694487/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:684529/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:616744/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1081301/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1412323/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1402426/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1397450/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1373775/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1056253/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1347938/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1335128/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:130707/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1023219/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1111139/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1257071/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1144634/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1239040/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1227522/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1192570/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1171015/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1056160/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1414980/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1421046/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1030880/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1054225/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:155/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:166965/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:179947/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1050281/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:208801/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:191455/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:1030983/57‑1 (MQ=255)aTTAACAGTAACGTCATCGGCCTGATTTTTGCCGGCTTACTGATACTGGCGGTGATc < 1:1051026/57‑1 (MQ=39) tagcGTTATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:141213/59‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:798830/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:1120718/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:985109/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:794762/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:881762/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:612570/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:1412995/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:296868/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:190586/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:425392/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:1443277/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:1216256/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:611926/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:266407/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:1266408/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:689613/62‑1 (MQ=255) tAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:1251673/62‑1 (MQ=255) aaCGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:1105230/61‑1 (MQ=255) aaCGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:265302/61‑1 (MQ=255) aaCGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:144911/48‑1 (MQ=255) cGTCATCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:264884/46‑1 (MQ=255) cATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTa < 1:101774/56‑1 (MQ=255) tCGGCCTGATTTTTGCCGGCTTACTGATGCTGGCGGTGATc < 1:569645/41‑1 (MQ=255) | ATTAACAGTAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTA > W3110S.gb/4336217‑4336286 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |