Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | W3110S.gb | 4,350,102 | T→G | Q46P (CAG→CCG) | yjdF ← | conserved inner membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 4,350,102 | 0 | T | G | 98.2% | 154.3 / ‑4.5 | 56 | Q46P (CAG→CCG) | yjdF | conserved inner membrane protein |
Reads supporting (aligned to +/- strand): ref base T (0/0); major base G (55/0); minor base C (1/0); total (56/0) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.24e-01 |
GCAGCGGCGTTAACGGATAACGTCTGGCGGTGGCAAGCAGTAGCTGCACGACAATAATCACC > W3110S.gb/4350058‑4350119 | gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:660619/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:148806/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:150367/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:29107/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:328288/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:360904/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:4293/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:448104/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:523503/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:556424/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:633207/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:645269/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:647861/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:278578/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:674039/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:701148/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:738434/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:765336/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:794564/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:870016/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:875139/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:885902/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:890708/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:909078/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:973112/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1272233/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1040568/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1073130/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1095267/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:111020/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1112328/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1119731/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1172042/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1175142/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1255949/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1264523/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1264538/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1265180/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1428265/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1300585/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1419307/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1417607/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:141631/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1413853/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1366314/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1365132/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:1343600/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAca > 1:1370267/1‑61 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAc > 1:719133/1‑61 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAc > 1:485582/1‑61 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAc > 1:1006757/1‑61 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAc > 1:150449/1‑61 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAc > 1:928088/1‑61 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGCCGCACGACAATAATCAcc > 1:1272937/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTTAGCGGTGGCAAGCAGTAGAGGCACGACAATAATCAcc > 1:701758/1‑62 (MQ=255) gcagcGGCGTTAACGGATAACGTTAAGCGGTGGCAAGCAGTAGCGGCACGACAATAATCAcc > 1:312081/1‑62 (MQ=255) | GCAGCGGCGTTAACGGATAACGTCTGGCGGTGGCAAGCAGTAGCTGCACGACAATAATCACC > W3110S.gb/4350058‑4350119 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |