| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 2,511,908 | 2 bp→CG | coding (170‑171/1086 nt) | ypdF ← | predicted peptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,511,908 | 0 | A | C | 98.4% | 175.1 / ‑6.4 | 63 | V57A (GTT→GCG) | ypdF | predicted peptidase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (0/62); minor base G (0/1); total (0/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | W3110S.gb | 2,511,909 | 0 | A | G | 100.0% | 176.4 / NA | 63 | V57A (GTT→GCG) | ypdF | predicted peptidase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (0/63); total (0/63) | |||||||||||
TGGTAGCCTTGCGCACGGGCTTCCACCTCAACGTAATAGCGCGAATCCACCAGAATGTGCGC > W3110S.gb/2511879‑2511940 || tGGTAACCTTGCGTGCGGGCTTCAACGTCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:366956/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCGGCTTAATAGCGCGAATCCACCAGAATGTgcgc < 1:3024/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:536471/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:326970/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:35355/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:377252/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:403502/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:420358/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:427821/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:43637/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:44040/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:444874/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:45757/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:511618/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:512319/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:521914/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:322380/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:564827/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:629852/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:655196/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:708900/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:71743/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:747681/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:756522/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:806103/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:809369/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:886732/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:891711/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:900912/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:902317/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:913246/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:928422/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:315219/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1061282/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1078450/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1083221/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:109696/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1119074/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1122615/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1134913/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1141830/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1175347/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1190312/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1195210/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1204294/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:12156/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:122518/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1234887/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1244484/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1247699/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1269256/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1296034/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1297807/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1367799/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1404569/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1405962/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1424246/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:15594/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:161511/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:255873/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:277006/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcgc < 1:1018483/62‑1 (MQ=255)tGGTAACCTTGCGTGCGGGCTTCAACATCCGCGTAATAGCGCGAATCCACCAGAATGTgcga < 1:549751/62‑2 (MQ=255) || TGGTAGCCTTGCGCACGGGCTTCCACCTCAACGTAATAGCGCGAATCCACCAGAATGTGCGC > W3110S.gb/2511879‑2511940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |