| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 64 (2.260) | 7/108 | 0.1 | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274313‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCC > W3110S.gb/576000‑576031 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2759806/62‑1CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1357795/62‑1CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2116434/62‑1CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:232452/62‑1CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2321009/62‑1CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2125426/62‑1 CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:244165/62‑1 CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1859005/62‑1 GTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:1951618/1‑61 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:2832879/1‑61 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2747684/57‑1 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2299006/57‑1 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:459873/61‑1 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:402079/61‑1 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:181994/61‑1 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:916688/61‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA < 1:3069818/62‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA < 1:2918372/62‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA < 1:2672524/62‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA < 1:1086399/62‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA < 1:1235613/62‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA < 1:1292499/62‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA < 1:1316153/62‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA < 1:180403/62‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTA < 1:671226/62‑1 CATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:2576805/1‑62 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT > 1:445961/1‑62 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT > 1:1750343/1‑62 TCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCC > 1:2671560/1‑62 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTAC < 1:1794208/48‑1 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTAC < 1:714049/48‑1 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTAC < 1:1849350/48‑1 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTAC < 1:1870965/48‑1 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTAC < 1:3108079/48‑1 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTAC < 1:2043960/48‑1 ATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG < 1:637450/50‑1 TATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAG < 1:1247565/49‑1 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACTGCAGAAATTGC > 1:984726/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:463561/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:1119825/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:924582/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:1423037/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:900110/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:818742/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:1569681/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:1657318/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:656434/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:1933428/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:610829/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:566170/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:482376/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:2654352/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:1956125/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:1961385/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:2069817/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:2084263/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:3073001/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:2244495/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:296253/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:2339673/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:2578425/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:2775218/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:2596689/1‑50 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:261497/1‑50 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274313‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCC > W3110S.gb/576000‑576031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |