| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | W3110S.gb | 1,301,041 | Δ1,336 bp | insC–insD | insC, insD | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 1301041–1302370 | 1302376 | 7–1336 | 10 [0] | [0] 10 | insC–insD | insC,insD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1301040 | 0 (0.000) | 6 (0.240) | 4/94 | 0.2 | 100% | intergenic (+218/‑90) | ychE/insC | predicted inner membrane protein/IS2 element protein |
| ? | W3110S.gb | 1302377 = | 0 (0.000) | intergenic (+19/‑519) | insD/oppA | IS2 element protein/oligopeptide transporter subunit | |||||
CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1300994‑1301040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatattaTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATA > W3110S.gb/1302377‑1302414 CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCT > 1:1838560/1‑62CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCT > 1:580924/1‑62 AATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGA > 1:2779375/1‑61 AATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGA > 1:2924648/1‑61 TGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAG > 1:867376/1‑62 GCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGT > 1:855260/1‑60 ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATA < 1:2368465/39‑1 ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATA < 1:2836611/39‑1 ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATA < 1:2886874/39‑1 ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATA < 1:553783/39‑1 CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1300994‑1301040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatattaTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATA > W3110S.gb/1302377‑1302414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |