| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3748799 = | 13 (0.460) | 17 (0.600) | 6/108 | 0.2 | 56.7% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 4056222 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
CTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3748847‑3748799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT > W3110S.gb/4056222‑4056280 CTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCA < 1:1388304/62‑1CTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCA < 1:1480378/62‑1 GGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGT > 1:858181/1‑62 GGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGT > 1:692213/1‑62 GGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGT > 1:3021431/1‑62 GGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGT > 1:2968684/1‑62 GGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGT > 1:251856/1‑62 GGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGT > 1:2255669/1‑62 TTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT < 1:701892/61‑1 TTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT < 1:1165475/61‑1 CCGGGTTATTTTTATTAGGGTAATGACTCCAACTTATTGATA < 1:522187/42‑1 CCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATA < 1:2565099/42‑1 CCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATA < 1:830790/42‑1 GGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGC > 1:2611470/1‑62 TAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT > 1:2911721/1‑62 TAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT > 1:2355723/1‑62 TAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT > 1:2060330/1‑62 CTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3748847‑3748799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT > W3110S.gb/4056222‑4056280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |