Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1248388	1248393	6	6 [0]	[0] 2	treA	periplasmic trehalase

AGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGAATATGACCGTAAGTG  >  W3110S.gb/1248326‑1248387                                                              | agGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGAATATGACCGTAAgtg  <  1:1423523/62‑1 (MQ=255) agGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGAATATGACCGTAAgtg  <  1:2116489/62‑1 (MQ=255) agGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGAATATGACCGTAAgtg  <  1:2351701/62‑1 (MQ=255) agGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGAATATGACCGTAAgtg  <  1:2892912/62‑1 (MQ=255) agGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGAATATGACCGTAAgtg  <  1:3086158/62‑1 (MQ=255) agGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGATTGCCGTTGGGAATATGACCGTAAgtg  <  1:94173/62‑1 (MQ=255)                                                              | AGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGAATATGACCGTAAGTG  >  W3110S.gb/1248326‑1248387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑