Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2074912	2074913	2	18 [0]	[0] 3	flu	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

CCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCG  >  W3110S.gb/2074868‑2074911                                            | cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:2638800/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:955299/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:659014/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:47361/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:472665/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:367829/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:2906482/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:275837/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:2638951/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:1383486/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:2580480/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:2551969/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:2254194/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:1954105/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:1712839/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:1703920/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:1690872/1‑44 (MQ=255) cccGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg  >  1:1534998/1‑44 (MQ=255)                                            | CCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCG  >  W3110S.gb/2074868‑2074911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑