Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2076821	2076835	15	2 [0]	[0] 3	flu/yeeR	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/predicted membrane protein

GGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCC  >  W3110S.gb/2076771‑2076820                                                  | ggCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTcc  >  1:2974293/1‑50 (MQ=255) ggCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTcc  >  1:974210/1‑50 (MQ=255)                                                  | GGCCACACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCC  >  W3110S.gb/2076771‑2076820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑