Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1140223	1140267	45	11 [1]	[0] 11	flgK	flagellar hook‑filament junction protein 1

CGCTGGCAACACAGATGCAGGATTTCTTCACCAGC  >  W3110S.gb/1140268‑1140302 |                                   cGCTGGCAACACAGATGCAGGATTTCTTCACCAGc  <  1:120973/35‑1 (MQ=255) cGCTGGCAACACAGATGCAGGATTTCTTCACCAGc  <  1:1258864/35‑1 (MQ=255) cGCTGGCAACACAGATGCAGGATTTCTTCACCAGc  <  1:1473988/35‑1 (MQ=255) cGCTGGCAACACAGATGCAGGATTTCTTCACCAGc  <  1:1578278/35‑1 (MQ=255) cGCTGGCAACACAGATGCAGGATTTCTTCACCAGc  <  1:1641292/35‑1 (MQ=255) cGCTGGCAACACAGATGCAGGATTTCTTCACCAGc  <  1:1690191/35‑1 (MQ=255) cGCTGGCAACACAGATGCAGGATTTCTTCACCAGc  <  1:1713379/35‑1 (MQ=255) cGCTGGCAACACAGATGCAGGATTTCTTCACCAGc  <  1:223609/35‑1 (MQ=255) cGCTGGCAACACAGATGCAGGATTTCTTCACCAGc  <  1:2621303/35‑1 (MQ=255) cGCTGGCAACACAGATGCAGGATTTCTTCACCAGc  <  1:2950944/35‑1 (MQ=255) cGCTGGCAACACAGATGCAGGATTTCTTCACCAGc  <  1:879947/35‑1 (MQ=255) |                                   CGCTGGCAACACAGATGCAGGATTTCTTCACCAGC  >  W3110S.gb/1140268‑1140302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑