Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 2,690,918 | 0 | G | A | 73.0% | 54.9 / 22.4 | 37 | F1094F (TTC→TTT) | purL | phosphoribosylformyl‑glycineamide synthetase |
Reads supporting (aligned to +/- strand): ref base G (2/8); new base A (27/0); total (29/8) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.17e-06 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CAGGATTGACTTCGCCCAACCTTCACCGGCACCCAGCACATCACCGTAGGAGAAACCACCGCACGCGACCAGGGCGTGGAAATCTTCCAGGCCCGTGCGTCCGGT > W3110S.gb/2690867‑2690971 | cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCg > 1:1032445/1‑61 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCg > 1:1847000/1‑61 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCg > 1:2749035/1‑61 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCg > 1:1709249/1‑61 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCg > 1:2952443/1‑61 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCg > 1:1373197/1‑61 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCg > 1:605252/1‑61 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCg > 1:1126663/1‑61 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:423052/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:361604/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:315072/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:676693/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:2937666/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:289981/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:734223/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:2885683/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:1938792/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:1933282/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:103524/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:176332/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:1186330/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:1415709/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:1553275/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:1601102/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:1724060/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATCACCGTAGGAAAAACCACCGc > 1:1726956/1‑62 (MQ=255) cAGGATAGACTTCGCCCAACCTTCACCAGCGCCCAGCACATAACCGTAGGAAAAACCACCg > 1:137687/1‑61 (MQ=255) gACTTCGCCCAACCTTCACCGGCACCCAGCACATCACCGTAGGAGAAACCACCGCAcgcg > 1:1176536/1‑60 (MQ=255) cAACCTTCACCGGCACCCAGCACATCACCGTAGGAGAAACCACCGCACGCGACCAGGGCggg < 1:1934193/62‑3 (MQ=255) cAACCTTCACCGGCACCCAGCACATCACCGTAGGAGAAACCACCGCACGCGACCAGGGCGTg < 1:2313353/62‑1 (MQ=255) cAACCTTCACCGGCACCCAGCACATCACCGTAGGAGAAACCACCGCACGCGACCAGGGCGTg < 1:1371459/62‑1 (MQ=255) aaCCTTCACCGGCACCCAGCACATCACCGTAGGAGAAACCACCGCACGCGACCAGGGCGTg < 1:2050186/61‑1 (MQ=255) aaCCTTCACCGGCACCCAGCACATCACCGTAGGAGAAACCACCGCACGCGACCAGGGCGTg < 1:1838572/61‑1 (MQ=255) aaCCTTCACCGGCACCCAGCACATCACCGTAGGAGAAACCACCGCACGCGACCAGGGCGTg < 1:709442/61‑1 (MQ=255) cGTAGGAGAAACCACCGCACGCGACCAGGGCGTGGAAATCTTCCAGGCCCGTGCGTCCGGt > 1:1643913/1‑61 (MQ=255) cGTAGGAGAAACCACCGCACGCGACCAGGGCGTGGAAATCTTCCAGGCCCGTGCGTCCGGt < 1:1757915/61‑1 (MQ=255) cGTAGGAGAAACCACCGCACGCGACCAGGGCGTGGAAATCTTCCAGGCCCGTGCGTCCGGt < 1:1468826/61‑1 (MQ=255) | CAGGATTGACTTCGCCCAACCTTCACCGGCACCCAGCACATCACCGTAGGAGAAACCACCGCACGCGACCAGGGCGTGGAAATCTTCCAGGCCCGTGCGTCCGGT > W3110S.gb/2690867‑2690971 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |