Predicted mutation
evidence seq id position mutation annotation gene description
RA W3110S.gb 3,492,265 T→C N141S (AAC→AGC)  pflD ← predicted formate acetyltransferase 2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb3,492,2650TC79.0% 34.8 / 4.5 19N141S (AAC→AGC) pflDpredicted formate acetyltransferase 2
Reads supporting (aligned to +/- strand):  ref base T (4/0);  new base C (15/0);  total (19/0)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01

CCTTTATCCGTCTGGTTGATGCTGAAAATCTGCGTGTTGGTCGCGGCTTTTACTTCATCTGTCATCTGCCCGTTGATGAAATCTTTCATCGAACGTTT  >  W3110S.gb/3492229‑3492326
                                    |                                                             
ccTTTATCCGTCTGGTTGATGCTGAAAATCTGCGTGTTGGTCGCGGCTTTTACTtcatctgt                                      >  1:1182514/1‑62 (MQ=255)
ccTTTATCCGTCTGGTTGATGCTGAAAATCTGCGTGTTGGTCGCGGCTTTTACTtcatctgt                                      >  1:2727839/1‑62 (MQ=255)
ccTTTATCCGTCTGGTTGATGCTGAAAATCTGCGTGTTGGTCGCGGCTTTTACTtcatctgt                                      >  1:2409100/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGt                                                           >  1:1058747/1‑39 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtca                                    >  1:2330028/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtca                                    >  1:677532/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtca                                    >  1:567028/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtca                                    >  1:2950912/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtca                                    >  1:2571529/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtca                                    >  1:2533071/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtca                                    >  1:223447/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtca                                    >  1:1892763/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtca                                    >  1:1673396/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtca                                    >  1:1487340/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtca                                    >  1:1330595/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtca                                    >  1:1293150/1‑62 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtc                                     >  1:2970772/1‑61 (MQ=255)
  tttATCCGTCTGGTTGATGCTGAAAATCTGCGTGCTGGTCGCGGCTTTTACTtcatccgtc                                     >  1:3081581/1‑61 (MQ=255)
                   tGCTGAAAATCTGCGTGTTGGTCGCGGCTTTTACTTCATCTGTCATCTGCCCGTTGATGaaa                   >  1:1420891/1‑62 (MQ=255)
                                  tgtTGGTCGCGGCTTTTACTTCATCTGTCATCTGCCCGTTGATGAAATCTTTCATCGAACGt    <  1:1052102/62‑1 (MQ=255)
                                  tgtTGGTCGCGGCTTTTACTTCATCTGTCATCTGCCCGTTGATGAAATCTTTCATCGAACGt    <  1:2036173/62‑1 (MQ=255)
                                   gtTGGGCGCGGCTTTTACTTCATCTGTCATCTGCCCGTTGATGAAATCTTTCATCGAACGt    <  1:985394/61‑1 (MQ=255)
                                    ttGGTCGCGGCTTTTACTTCATCTGTCATCTGCCCGTTGATGAAATCTTTCATCGAACGttt  <  1:2056889/62‑1 (MQ=255)
                                    ttGGTCGCGGCTTTTACTTCATCTGTCATCTGCCCGTTGATGAAATCTTTCATCGAACGttt  <  1:2424442/62‑1 (MQ=255)
                                    ttGGTCGCGGCTTTTACTTCATCTGTCATCTGCCCGTTGATGAAATCTTTCATCGAACGttt  <  1:777740/62‑1 (MQ=255)
                                    |                                                             
CCTTTATCCGTCTGGTTGATGCTGAAAATCTGCGTGTTGGTCGCGGCTTTTACTTCATCTGTCATCTGCCCGTTGATGAAATCTTTCATCGAACGTTT  >  W3110S.gb/3492229‑3492326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: