Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | W3110S.gb | 4,302,518 | A→G | R110R (CGT→CGC) | fdhF ← | formate dehydrogenase‑H, selenopolypeptide subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 4,302,518 | 0 | A | G | 80.0% | 14.6 / ‑0.5 | 10 | R110R (CGT→CGC) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit |
Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (0/8); total (1/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.00e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.38e-01 |
CGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGA > W3110S.gb/4302476‑4302540 | cgcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCt < 1:1226355/62‑1 (MQ=255) tACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGa > 1:356086/1‑50 (MQ=255) aTAGTTGGTTTCGTTACCCGTACCGCGCGAGGAGCCGGTCGTCTGGa < 1:1589162/47‑1 (MQ=255) aTAGTTGGTTTCGTTACCCGTACCGCGCGAGGAGCCGGTCGTCTGGa < 1:2612313/47‑1 (MQ=255) aTAGTTGGTTTCGTTACCCGTACCGCGCGAGGAGCCGGTCGTCTGGa < 1:2946410/47‑1 (MQ=255) aTAGTTGGTTTCGTTACCCGTACCGCGCGAGGAGCCGGTCGTCTGGa < 1:2952312/47‑1 (MQ=255) aTAGTTGGTTTCGTTACCCGTACCGCGCGAGGAGCCGGTCGTCTGGa < 1:385429/47‑1 (MQ=255) aTAGTTGGTTTCGTTACCCGTACCGCGCGAGGAGCCGGTCGTCTGGa < 1:819568/47‑1 (MQ=255) ttGGTTTCGTTACCCGTACCGCGCGAGGAGCCGGTCGTCTGGa < 1:1978482/43‑1 (MQ=255) tCGTTACCCGTACCGCGCGAGGAGCCGGTCGTCTGGa < 1:2652336/37‑1 (MQ=255) | CGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGA > W3110S.gb/4302476‑4302540 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |